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Getting Started

How Moonworkers works, account setup, and first steps for new users.
Nicolas Croix
By Nicolas Croix •
9 articles

Managing Multiple Payroll Schemes

Moonworkers supports accountants and payroll bureaus managing payroll for multiple clients, as well as employers running more than one PAYE scheme. Each employer account is fully independent. Switching between employer accounts Once you have access to more than one employer, an employer switcher appears at the top of the sidebar. Click it to see the full list of employers you manage. Select any employer to switch — the entire interface updates to show only that employer's data. Independent payruns and schedules Each employer has entirely separate pay schedules and payruns. Running payroll for one client has no effect on any other. HMRC credentials per employer Every employer account stores its own PAYE reference and Accounts Office reference. FPS submissions are made automatically under the correct employer's credentials when you finalise a payrun. To update an employer's HMRC credentials, go to Settings within that employer account and edit the HMRC details section. Adding a new employer account Go to Settings > Employers and click Add employer. Enter the employer's registered name, PAYE reference, and Accounts Office reference. The new employer appears in your switcher immediately. Accountant access All clients are accessible from a single login. Each client's data (staff lists, payslips, submissions) is visible only within their employer account. You can also invite team members to access specific employer accounts to delegate payroll processing within your practice. Billing Moonworkers charges per active employee per month, per employer. Each employer account is billed independently. Volume discounts are available on the accountant plan for practices managing multiple clients.

Last updated on May 26, 2026

Adding your company and HMRC details

After choosing the employer account type, you create your company profile and enter the HMRC references that let Moonworkers file payroll on your behalf. Your company profile Enter your business details so that payslips, reports and submissions show the correct organisation. When you register as an employer, this is your own company. Your HMRC references Moonworkers asks for the references that HMRC issues when you register as a PAYE employer. Your Employer PAYE reference is made up of your Tax Office Number, a three digit number, followed by a slash and your Tax Office Reference, for example 123/AB45678. Your Accounts Office reference is a 13 character reference, for example 123PX00123456. How do I enter my Employer PAYE reference? Moonworkers holds the two parts in separate fields, so split the reference at the slash. For 126/U148, enter 126 in Tax Office Number and U148 in Tax Office Reference. Do not type the full reference, slash included, into the Tax Office Reference field. HMRC then rejects your FPS because the reference does not match your record, even though your credentials are accepted. This is one of the most common causes of a failed first submission. Where to find them You receive both references in the letter HMRC sends after you register as an employer. They also appear in your HMRC online account and on correspondence from HMRC's Accounts Office. Why Moonworkers needs them Each time you finalise a payrun, Moonworkers submits a Full Payment Submission (FPS) to HMRC in real time. HMRC matches that submission to your business using your Tax Office Number, Tax Office Reference and Accounts Office reference, so enter these details exactly as shown on your HMRC paperwork. You can update them later in Settings if anything changes. Get started You add these details during onboarding. Continue at https://payroll.moonworkers.co.uk/onboarding to set up your company and HMRC references.

Last updated on Sep 19, 2026

Moving your payroll to Moonworkers part way through the tax year

Most businesses join Moonworkers part way through a tax year, from another provider or from a spreadsheet. The switch is simple if you take the steps in the right order. This checklist follows that order, and each step links to the article that covers it in detail. Is my employer on the right tax year? Check this first, before you enter anything else. Go to Settings, open your employer settings and look at the Payroll tab. The tax year shown there is the one your opening values, pay schedules and payroll runs will belong to. If you picked the wrong year when you created the company, change it on the same Payroll tab. You can only change the tax year while no payroll run exists for the employer. If you have already started a run, delete it first from Payroll > Payroll Run, then change the year. That is why this step comes first: entering opening values and then changing the year means entering them again. Are my HMRC references entered correctly? Your Employer PAYE reference looks like 126/U148. Moonworkers stores it in two separate fields: the Tax Office Number is the three digits before the slash (126) and the Tax Office Reference is everything after it (U148). Do not type the full reference, slash included, into the Tax Office Reference field: HMRC will reject your FPS because the reference no longer matches your record. Your Accounts Office reference is the 13 character reference, for example 123PA00045678. See "Adding your company and HMRC details". How do I bring in each employee's year-to-date figures? Open the employee profile, go to the Pay and compensation tab and open Opening values. There are two sub-tabs, one for tax and one for National Insurance, and each can be switched between a normal and an advanced mode. Enter the figures for this tax year from your previous payroll: gross pay, tax paid, National Insurance by category letter, and any student or postgraduate loan deductions. Take them from your last payslip run or the employee's P45. See "Editing pay and compensation". How do I set up my pay schedule when I start mid-year? Create the schedule in Settings > Payroll and set its index to the tax period of your first Moonworkers payroll run, not to 1. Then assign your employees to it: on the schedule's line, click the user icon and add them. An employee who is not assigned to a schedule does not appear in the payroll run. See "Creating and managing pay schedules". Are my RTI settings ready for a live submission? In Settings > HMRC / RTI, enter the Government Gateway user ID and password you use for PAYE Online for employers, typed rather than pasted. Then check the Test mode switch. With Test mode on, submissions go to HMRC's test service and are not recorded against your PAYE scheme, so a live FPS will not go through. Switch it off before your first real payroll run. See "Configuring your HMRC and RTI settings". What should I check in my first payroll run? Run it as normal from Payroll > Payroll Run, then open each employee and download a payslip preview. Check that the year-to-date figures on the preview continue from your previous provider's last payslip. This is the step that catches a wrong opening value while it is still easy to fix. You can run the payroll early, for example before a holiday, as long as you keep HMRC's order: run the payroll, submit the FPS, then pay your employees. Do I need to send an EPS? Usually, yes. If you are claiming Employment Allowance and your previous provider had not already claimed it this tax year, send an EPS after your first FPS so HMRC applies the claim. If Employment Allowance was already partly used with your previous provider, set the remaining amount rather than the full annual allowance, so only the balance is claimed. See "Employment Allowance and Small Employers' Relief". Can the Moonworkers team look at my account with me? Yes. Ask in the chat and we will give you an address to invite as a team member. We then see exactly what you see rather than answering blind. You can remove the access once the issue is solved. See "Inviting colleagues and finishing onboarding". Get started Sign in at https://payroll.moonworkers.co.uk/auth/login and start with your employer settings, Payroll tab.

Last updated on Sep 19, 2026